Concept #1: Base Color
Horses all have a base color of either black, bay, or red - regardless if they are grey, buckskin, spotted, etc.
The base color is controlled by two genes - the Extension gene and the Agouti gene.
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The Extension gene controls the production of black or red pigment in the coat.
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Represented by the letter "E" or "e"
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Black is dominant, which means that only one copy of the dominant allele is needed to produce a black horse.
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The Agouti gene can then modify the black pigment by pushing it to the points - creating a bay horse.
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Represented by the letter "A" or "a"
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Agouti is dominant, which means that only one copy of the allele is needed to produce a bay horse.
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Agouti is not seen physically on red horses.
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This is every possible outcome when you breed a bay stallion with a bay mare.
With the genotype of EeAa x EeAa
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Bay: 9/16 = 56.25%
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Black: 3/16 = 18.75%
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Chestnut: 4/16 = 25%
Here are the probabilities with the following scenarios:
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Black stallion (EEaa) with Black mare (Eeaa)
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Black: 100% - all foals will be either EEaa or Eeaa
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Bay: 0%
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Chestnut: 0%
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Bay stallion (EEAA) with Chestnut mare (eeaa)
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Black: 0%
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Bay: 100% - all foals will be EeAa
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Chestnut: 0%
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Chestnut stallion (eeaa) with Chestnut mare (eeaa)
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Black: 0%
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Bay: 0%
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Chestnut: 100% - all foals will be eeaa
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Chestnut stallion (eeAa) with Chestnut mare (eeAA)
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Black: 0%
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Bay: 0%
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Chestnut: 100% - all foals will be either eeAA or eeAa
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Black stallion (Eeaa) with Chestnut mare (eeaa)
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Black: 50% - Eeaa
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Bay: 0%
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Chestnut: 50% - eeaa
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Bay stallion (EeAa) with Chestnut mare (eeAa)
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Black: 12.5% - Eeaa
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Bay: 37.5% - EeAA, EeAa
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Chestnut: 50% - eeAA, eeAa, eeaa
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