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Concept #1: Base Color

Horses all have a base color of either black, bay, or red - regardless if they are grey, buckskin, spotted, etc.

 

The base color is controlled by two genes - the Extension gene and the Agouti gene.

  • The Extension gene controls the production of black or red pigment in the coat.

    • Represented by the letter "E" or "e"

    • Black is dominant, which means that only one copy of the dominant allele is needed to produce a black horse.
       

  • The Agouti gene can then modify the black pigment by pushing it to the points - creating a bay horse.

    • Represented by the letter "A" or "a"

    • Agouti is dominant, which means that only one copy of the allele is needed to produce a bay horse.

    • Agouti is not seen physically on red horses.

 

This is every possible outcome when you breed a bay stallion with a bay mare. 

With the genotype of EeAa x EeAa

 

  • Bay: 9/16 = 56.25%

  • Black: 3/16 = 18.75%

  • Chestnut: 4/16 = 25%

Here are the probabilities with the following scenarios:

  • Black stallion (EEaa) with Black mare (Eeaa)

    • Black: 100% - all foals will be either EEaa or Eeaa

    • Bay: 0%

    • Chestnut: 0%

  • Bay stallion (EEAA) with Chestnut mare (eeaa)

    • Black: 0%

    • Bay: 100% - all foals will be EeAa

    • Chestnut: 0%

  • Chestnut stallion (eeaa) with Chestnut mare (eeaa)

    • Black: 0%

    • Bay: 0%

    • Chestnut: 100% - all foals will be eeaa

  • Chestnut stallion (eeAa) with Chestnut mare (eeAA)

    • Black: 0%

    • Bay: 0%

    • Chestnut: 100% - all foals will be either eeAA or eeAa

  • Black stallion (Eeaa) with Chestnut mare (eeaa)

    • Black: 50% - Eeaa

    • Bay: 0%

    • Chestnut: 50% - eeaa

  • Bay stallion (EeAa) with Chestnut mare (eeAa)

    • Black: 12.5% - Eeaa

    • Bay: 37.5% - EeAA, EeAa

    • Chestnut: 50% - eeAA, eeAa, eeaa

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